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DTSTART;TZID=America/Chicago:20181113T133000
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UID:submissions.supercomputing.org_SC18_sess206@linklings.com
SUMMARY:Biology Applications
DESCRIPTION:Paper\nAlgorithms, Applications, Computational Biology, Scient
 ific Computing, Tech Program Reg Pass\n\nRedesigning LAMMPS for Petascale 
 and Hundred-Billion-Atom Simulation on Sunway TaihuLight\n\nDuan, Gao, Zha
 ng, Zhang, Liu...\n\nLarge-scale molecular dynamics (MD) simulations on su
 percomputers play an increasingly important role in many research areas. I
 n this paper, we present our efforts on redesigning the widely used LAMMPS
  MD simulator for Sunway TaihuLight supercomputer and its ShenWei many-cor
 e architecture (SW26010)....\n\n---------------------\nExtreme Scale De No
 vo Metagenome Assembly\n\nGeorganas, Egan, Hofmeyr, Goltsman, Arndt...\n\n
 Metagenome assembly is the process of transforming a set of short, overlap
 ping, and potentially erroneous DNA segments from environmental samples in
 to the accurate representation of the underlying microbiomes's genomes. St
 ate-of-the-art tools require large shared memory machines and cannot handl
 e co...\n\n---------------------\nOptimizing High Performance Distributed 
 Memory Parallel Hash Tables for DNA k-mer Counting\n\nPan, Misra, Aluru\n\
 nHigh-throughput DNA sequencing is the mainstay of modern genomics researc
 h. A common operation used in bioinformatic analysis for many applications
  of high-throughput sequencing is the counting and indexing of fixed lengt
 h substrings of DNA sequences called k-mers. Counting k-mers is often acco
 mplis...\n
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